Battenberg
Battenberg is a copy number caller originally described in Nik-Zainal, Van Loo, Wedge, et al. (2012), Cell. Battenberg uses haplotype phasing to increase the resolution of copy number calling. As a result, it can call subclonal copy number changes in as little as 3% of cells. Battenberg was orginally applied to Whole Genome Sequencing data aligned to hg19, but also runs on hg38 aligned WGS and on SNP array data.
Stefan Dentro
Postdoctoral Researcher
David Wedge
Professor of Cancer Genomics and Data Science
My research interests include cancer genomics, tumour evolution, data science and machine learning.
